astex
Class SecondaryStructure

java.lang.Object
  astex.SecondaryStructure

public class SecondaryStructure
extends java.lang.Object

Class for assigning secondary structure to a protein molecule.

Field Summary

static boolean

debug

Constructor Summary

SecondaryStructure()

Method Summary

static Tmesh	assign(DynamicArray molecules) Assign secondary structure to residues in a protein molecule.
static void	assignInitialType(Residue res) Assign initial type on basis of phi/psi.
static void	assignMolecule(Molecule mol) Assign secondary structure for this molecule.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

debug

public static boolean debug

Constructor Detail

SecondaryStructure

public SecondaryStructure()

Method Detail

assign

public static Tmesh assign(DynamicArray molecules)

Assign secondary structure to residues in a protein molecule.

assignMolecule

public static void assignMolecule(Molecule mol)

Assign secondary structure for this molecule.

assignInitialType

public static void assignInitialType(Residue res)

Assign initial type on basis of phi/psi.