Serialized Form

Package <Unnamed>

Class MoleculeViewerApplet extends java.applet.Applet implements Serializable

Serialized Fields

moleculeViewer

MoleculeViewer moleculeViewer

The MoleculeViewer.

debug

boolean debug

Should we output debugging info.

initialised

boolean initialised

Have we been initialised.

initStep

int initStep

What stage of initialisation are we at.

prepareThread

java.lang.Thread prepareThread

The thread that will drive the progress bar.

fontHeight

int fontHeight

splashImage

java.awt.Image splashImage

splashWidth

int splashWidth

splashHeight

int splashHeight

hexFormat

Format hexFormat

colorChooserFrame

java.awt.Frame colorChooserFrame

colorChooserDialog

java.awt.Dialog colorChooserDialog

colorChooser

ColorChooser colorChooser

Package astex

Class astex.Arguments extends java.util.Hashtable implements Serializable

Class astex.ColorButton extends ImageButton implements Serializable

Serialized Fields

colorChooserFrame

java.awt.Frame colorChooserFrame

colorChooserDialog

java.awt.Dialog colorChooserDialog

colorChooser

ColorChooser colorChooser

cancelled

boolean cancelled

Was the action cancelled.

colorString

java.lang.String colorString

The last color that was selected or null if cancel was pressed.

Class astex.ColorChooser extends java.awt.Panel implements Serializable

Serialized Fields

dialog

java.awt.Dialog dialog

cs

ColorSpace cs

red

jclass.bwt.JCSpinBox red

green

jclass.bwt.JCSpinBox green

blue

jclass.bwt.JCSpinBox blue

hexText

java.awt.TextField hexText

colorSample

java.awt.Panel colorSample

ok

jclass.bwt.JCButton ok

cancel

jclass.bwt.JCButton cancel

accept

boolean accept

rgb

int rgb

Class astex.ColorSpace extends java.awt.Canvas implements Serializable

Serialized Fields

width

int width

height

int height

pixels

int[] pixels

awtImage

java.awt.Image awtImage

The image that we will use.

memoryImageSource

java.awt.image.MemoryImageSource memoryImageSource

The pixel buffer that will produce the image.

hsv

double[] hsv

rgb

double[] rgb

irgb

int[] irgb

Class astex.ContourScrollbar extends java.awt.Scrollbar implements Serializable

Class astex.ImageButton extends java.awt.Canvas implements Serializable

Serialized Fields

image

java.awt.Image image

command

java.lang.String command

selected

boolean selected

size

java.awt.Dimension size

buttonSize

int buttonSize

shadowWidth

int shadowWidth

armed

boolean armed

actionListeners

java.util.Vector<E> actionListeners

Class astex.Layout extends java.lang.Object implements Serializable

Class astex.LightCanvas extends java.awt.Canvas implements Serializable

Serialized Fields

moleculeViewer

MoleculeViewer moleculeViewer

moleculeRenderer

MoleculeRenderer moleculeRenderer

renderer

Renderer renderer

width

int width

height

int height

w2

int w2

h2

int h2

activeLight

int activeLight

Class astex.MoleculeViewer extends java.awt.Canvas implements Serializable

Serialized Fields

moleculeRenderer

MoleculeRenderer moleculeRenderer

The molecule renderer that this viewer will use.

showFrameRate

boolean showFrameRate

Should we show the frame rate.

showVersion

boolean showVersion

Should we show the version.

moveAtomsAllowed

boolean moveAtomsAllowed

Do we allow atoms to be moved.

excludeFromSelection

boolean excludeFromSelection

Do we exclude specified atoms from the selection.

ready

boolean ready

Are we initialised?

splashImage

java.awt.Image splashImage

Are we initialised?

announce

boolean announce

Are we announcing the origin of AstexViewer.

keyDefinitions

java.util.Hashtable<K,V> keyDefinitions

Definition of key bindings.

animationThread

Animate animationThread

The animation thread.

animationThreadActive

boolean animationThreadActive

Are we currently animating.

stages

java.util.Vector<E> stages

The animation stages.

application

boolean application

Is this MoleculeViewer running in an application.

preferredSize

java.awt.Dimension preferredSize

The preferred size for this MoleculeViewer.

f1

Format f1

A format for presenting the frame rate.

firstTime

boolean firstTime

centerField

java.awt.TextField centerField

lastMouseEvent

java.awt.event.MouseEvent lastMouseEvent

The last mouse event.

mousePressedEvent

java.awt.event.MouseEvent mousePressedEvent

The mouse pressed event.

frameCount

int frameCount

The number of frames since we last pressed the mouse button.

mousePressedTime

long mousePressedTime

The time the mouse button was pressed.

pickedAtom

Atom pickedAtom

The atom that we picked.

dragged

boolean dragged

Has the mouse been dragged since the button was pressed.

centerMoved

boolean centerMoved

Has the center been moved by dragging the mouse.

popup

java.awt.PopupMenu popup

The popup menu we will use if necessary.

manipulator

astex.xmt.Manipulator manipulator

The manipulator object for the viewer.

onClickLabel

java.lang.String onClickLabel

mouseOverCommand

java.lang.String mouseOverCommand

mouseOverLabel

java.lang.String mouseOverLabel

trackedAtom

Atom trackedAtom

trackedAtomLabel

java.lang.String trackedAtomLabel

pickedAtoms

DynamicArray pickedAtoms

The list of atoms that are picked.

closeMoleculeMenu

java.awt.Menu closeMoleculeMenu

The menu that we will use for closing molecules.

saveMoleculeMenu

java.awt.Menu saveMoleculeMenu

The menu that we will use for saving molecules.

ligandMenu

java.awt.Menu ligandMenu

The menu that we will use for choosing ligand residues.

writeBMPHash

java.util.Hashtable<K,V> writeBMPHash

builtinColors

java.lang.String[] builtinColors

nothingCheckbox

java.awt.CheckboxMenuItem nothingCheckbox

distancesCheckbox

java.awt.CheckboxMenuItem distancesCheckbox

angleCheckbox

java.awt.CheckboxMenuItem angleCheckbox

torsionsCheckbox

java.awt.CheckboxMenuItem torsionsCheckbox

checkboxHashtable

java.util.Hashtable<K,V> checkboxHashtable

The hashtable to map from sliders to checkboxes.

mapHashtable

java.util.Hashtable<K,V> mapHashtable

The hashtable to map from sliders to maps.

contourLevelHashtable

java.util.Hashtable<K,V> contourLevelHashtable

The hashtable to map from sliders to contourlevels.

contourFormat

Format contourFormat

Format object for formatting the label.

viewChangeOnly

boolean viewChangeOnly

repaintListeners

DynamicArray repaintListeners

hexFormat

Format hexFormat

Class astex.ObjectControl extends java.awt.Panel implements Serializable

Serialized Fields

userInterface

UserInterface userInterface

The tmesh object we control.

tmesh

Tmesh tmesh

selected

jclass.bwt.JCCheckbox selected

displayed

jclass.bwt.JCCheckbox displayed

backface

jclass.bwt.JCCheckbox backface

transparency

jclass.bwt.JCSlider transparency

delete

jclass.bwt.JCButton delete

edit

jclass.bwt.JCButton edit

colorButton

ColorButton colorButton

Class astex.ObjectPropertyDialog extends java.awt.Dialog implements Serializable

Serialized Fields

object

Tmesh object

The object that we are currently operating on.

moleculeRenderer

MoleculeRenderer moleculeRenderer

The MoleculeRenderer object.

active

boolean active

Is the object active yet.

textureCoordinate

jclass.bwt.JCCheckboxGroup textureCoordinate

Which texture coordinate we are editing.

applyCharges

jclass.bwt.JCCheckbox applyCharges

applyMlp

jclass.bwt.JCCheckbox applyMlp

uminSB

jclass.bwt.JCSpinBox uminSB

vminSB

jclass.bwt.JCSpinBox vminSB

umaxSB

jclass.bwt.JCSpinBox umaxSB

vmaxSB

jclass.bwt.JCSpinBox vmaxSB

imageHash

java.util.Hashtable<K,V> imageHash